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Hi there,
I am using MLwin 3.08 and after running the IGLS procedure to obtain initial values for an MCMC model and running:

runmlwin `Model', ///
level3(id3: cons) level2(id2: cons) level1(id1:) ///
discrete(distribution(binomial) link(logit) denom(cons)) ///
mlwinpath($MLwiNPath) mcmc(on ...